Publications

Select Nature Journals

Single-cell analysis reveals inflammatory interactions driving macular degeneration

Beta cell-derived cholecystokinin drives obesity-associated pancreatic adenocarcinoma development

Multi-view manifold learning of human brain-state trajectories

ImmunoStruct enables multimodal deep learning for immunogenicity prediction

Visualizing structure and transitions in high-dimensional biological data

Mapping the gene space at single-cell resolution with gene signal pattern analysis

Multiscale PHATE identifies multimodal signatures of COVID-19

Exploring single-cell data with deep multitasking neural networks

Quantifying the effect of experimental perturbations at single-cell resolution

Select Other Journals

AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity

Learnable Filters for Geometric Scattering Modules

Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data

Manifold Interpolating Optimal-Transport Flows for Trajectory Inference

Mapping Phenotypic Plasticity upon the Cancer Cell State Landscape Using Manifold Learning

The Manifold Scattering Transform for High-Dimensional Point Cloud Data

More publication references available via PubMed and Arxiv.org