Publications Select Nature Journals Single-cell analysis reveals inflammatory interactions driving macular degeneration Beta cell-derived cholecystokinin drives obesity-associated pancreatic adenocarcinoma development Multi-view manifold learning of human brain-state trajectories ImmunoStruct enables multimodal deep learning for immunogenicity prediction Visualizing structure and transitions in high-dimensional biological data Mapping the gene space at single-cell resolution with gene signal pattern analysis Multiscale PHATE identifies multimodal signatures of COVID-19 Exploring single-cell data with deep multitasking neural networks Quantifying the effect of experimental perturbations at single-cell resolution Select Other Journals AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity Learnable Filters for Geometric Scattering Modules Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data Manifold Interpolating Optimal-Transport Flows for Trajectory Inference Mapping Phenotypic Plasticity upon the Cancer Cell State Landscape Using Manifold Learning The Manifold Scattering Transform for High-Dimensional Point Cloud Data More publication references available via PubMed and Arxiv.org